TOPMed
Methods
Sequencing and data processing methods are available for each data freeze. Data freezes occur at periodic intervals, and data are available via controlled access on dbGaP. Additional information about standards, pipelines, and flowcharts for data processing are detailed below
Standards, Pipelines and Flowcharts for Data Processing
Guidelines for sample randomization in assay performance
- TOPMed MESA Pilot RNA - seq Pipeline
- CORE Year 1 (Phase 3) Whole Genome Sequencing Final Data Format Requirements
- CORE Year 2 (Phase 4) TOPMed RNA - seq Pipeline
- CORE Year 2 (Phase 4) TOPMed RNA - seq Pipeline Flowchart
- CORE Year 3 (Phase 5) TOPMed RNA - seq Pipeline
- CORE Year 3 (Phase 5) TOPMed RNA - seq Pipeline Flowchart
- CORE Year 3 (Phase 5) Methylation Array Pipeline
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